Structure hierarchy

Coordinate source

No source loadedImport an archive record or a local coordinate file.

Coordinate identity

Assembly Model Alt. location

These choices are scientific state. They are recorded in project history and never changed silently.

Objects

No molecular objects Chains, ligands, waters, ions and derived objects will be listed here without flattening their identifiers.

Coordinate classes

Deposited: Archive coordinates and their deposited metadata.
Predicted: A computed model; confidence is not experimental validation.
Derived: A new coordinate state produced from a recorded operation.

Sequence ↔ structure

Nothing mapped

Load a coordinate source to map polymer sequence to observed coordinates.

Begin from traceable coordinates

Open a structure.

Inspect deposited structures, predicted models and every derived state without confusing one for another. No analysis is reported until it has actually run.

Where should these coordinates go? Add as an objectKeep this scene and compare, align or dock independently. Replace sceneStart a new project from this source.

PDB · mmCIF · SDF/MOL · MOL2

DepositedKeep archive identity, revision, experiment and assembly evidence.

PredictedKeep confidence metadata separate from experimental validation.

DerivedKeep the parent coordinates and operation history attached.

No coordinate set 0 atoms

Navigate 0 selected Å

Analysis notebook

0 results

Inspect

Interrogate coordinates and sequence

Selections, measurements, contacts, typed interactions, secondary structure, superposition, and the sequence the coordinates belong to. Every result keeps the stable atom addresses and the coordinate state it was measured on.

Sequence ↔ structure

Open a structure.

Query + command

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